Bigindexer MCP Server

BGI - Big Indexer

Copyright (c) 2026 Ahmed Xuhri — Licensed under Apache-2.0.

BGI is a static architecture analysis tool for large codebases. It groups code units by behavioral role and emits explicit architectural boundaries. Project domain: bigindexer.com

Use via MCP Registry

Big Indexer is published in the MCP Registry as io.github.ahmedxuhri/bigindexer.

pip install bigindexer==0.1.2
bgi mcp --graph bgi-graph.json --fuse-graph fuse-graph.json

Validation: https://bigindexer.com/validation

What problem this solves

Most architecture graphs fail at scale in two ways:

• too many noisy edges
• giant clusters that collapse unrelated components together

BGI is built to keep both under control, so the output remains usable on large repos.

What you can do with it (practical outcomes)

1. Find probable component boundaries for refactoring and ownership.
2. Spot high-coupling seams between subsystems.
3. Generate machine-readable architecture artifacts (bgi-graph.json, fuse-graph.json) for automation and review.
4. Feed AI agents implementation-oriented MCP context (task_fingerprint, behavioral_twins, twin_context) so they start from proven in-repo patterns.

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30-second demo

Run BGI on the included fixture repo:

git clone https://github.com/ahmedxuhri/bigindexer
cd bigindexer
pip install -e .
bgi scan tests/fixtures --lang python --out /tmp/bgi-example.json
head -50 /tmp/bgi-example.json

Observed result on this repository:

• units: 12
• edges: 14
• clusters: 2
• max cluster in sample: 6 units

One produced edge looks like:

{
  "source": "auth_module.py::AuthService::__init__",
  "target": "auth_module.py::AuthService::__del__",
  "key": "COV.INIT",
  "lock": "COV.TEARDOWN",
  "type": "HARD"
}

Why this matters: instead of raw syntax references only, you get behavioral relationships plus cluster structure that can drive architecture decisions.

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Plain-English glossary

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Architecture in one view

Source files
   ->
Gate 1: fingerprint unit behavior (COV tokens)
   ->
Gate 2: create behavioral edges with scoped matching
   ->
Gate 3: cluster with hard size cap + boundary emission
   ->
Artifacts: bgi-graph.json, fuse-graph.json, optional routes/graphml/html

Core approach:

1. TOKEN-CENSUS - classify token frequency per repo.
2. SPECTRAL-MASKS - restrict match scope by token frequency.
3. FUSE-MAP - cap cluster growth and record refused merges.
4. MASK-4-GATE-3 - use import proximity as clustering signal.
5. WATER-CLOCK + .scm - single-pass query extraction path in Gate 1.

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Why BGI is different from common alternatives

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Evidence (current, verifiable)

Large-repo scale evidence

Comparable kubernetes sample (go comparable mode, 162,917 units):

• Gate 1: 141.964s
• Gate 2: 67.261s (historical comparable baseline: 138.869s)
• Gate 3: 9.359s
• Total: 218.584s
• Max cluster: 1.113%
• Fuse events: 0

Artifact: output/validation/kubernetes-optionb-controlled-median-v21.json

Quality guard evidence (beyond raw speed)

• Gate 2 scope safety tests block invalid cross-scope merges (see tests/test_gate2.py).
• Gate 3 tests verify no legacy namespace over-merge without import evidence (see tests/test_gate3.py).
• Current full suite status: python3 -m pytest tests/ -x -q (project baseline target remains passing).

Evidence summary

• Current published validation set: 100 scored runs across 5 repos and 3 models.
• Full 20-run post-shipment benchmark refresh for BGI-TWIN context (task → COV → top-3 twins + seam + rubric) is complete: actionability 4.75/5 (p04 slice: 4.8/5), boundary 1.0, hallucinations 0.
• Independent-model replication is now complete on azure/gpt-4o (20 runs) and gemini/auto (20 runs): GPT-4o actionability 4.85/5, Gemini actionability 4.25/5, both with zero hallucinations; Gemini boundary 0.95 reflects one genuine django/p02 miss.
• Still missing: labeled precision/recall benchmark on an external corpus and head-to-head quantitative benchmark vs external tools on the same labeled dataset.

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Language support tiers (explicit)

BGI does not treat all languages equally; support is tiered:

1. Query-backed (.scm): python, typescript
2. Tree-sitter scanner + rule path: javascript, java, go, rust, ruby, csharp, php, kotlin, c, scala, lua, elixir
3. Generic regex fallback by extension: swift, r, dart, bash, nim, zig, haskell, ocaml, fsharp, clojure, erlang, matlab, vb, crystal, cobol, groovy

Use this as a reliability signal: query-backed and dedicated scanner tiers are stronger than generic fallback.

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Limitations and non-goals

1. BGI is static analysis; it does not ingest runtime traces.
2. Cross-file semantic resolution is heuristic and language-dependent.
3. Cluster-size health is measured; full external precision/recall is not yet published.
4. Shared-host benchmarking introduces variance; decisions should use controlled medians.

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Install

pip install -e .

Quickstart commands

# scan
bgi scan /path/to/repo --lang auto --out bgi-graph.json

# optional outputs
bgi scan /path/to/repo --lang auto \
  --fuse-graph fuse-graph.json \
  --routes routes.json \
  --graphml graph.graphml \
  --html

# incremental
bgi scan /path/to/repo --lang auto --incremental --cache .bgi-cache.json

# diff
bgi diff /path/before /path/after --lang auto --out diff.json

# run MCP server over generated artifacts
bgi mcp --graph bgi-graph.json --fuse-graph fuse-graph.json

Example MCP usage pattern (from your client prompt):

Use MCP tool twin_context for:
"Add endpoint that validates input and persists data."
Return top twin candidate, seam suggestion, and rubric checklist.

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Current project status

• Phase 1 quality architecture: complete
• Phase 5 Water-Clock: complete
• Phase 6 interactive index/search: complete
• Phase 7 Option B (Gate 2 performance tuning): complete
• Phase 8 MCP + BGI-TWIN context packaging: shipped (full 20-run post-shipment refresh + GPT-4o + Gemini replication complete)
• Phase 9 public launch: in progress (local/public doc split complete; registry submission next)

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Documentation map

• MEMORANDUM.md - design contracts and invariants
• docs/LANGUAGE_SUPPORT.md - language implementation details
• docs/CONTRIBUTING_LANGUAGES.md - language contribution guide
• docs/INDEX_SCHEMA.md - interactive index schema
• docs/QUERY_PLANNER.md - query planner scoring
• docs/MCP_SETUP.md - MCP server setup and usage
• https://bigindexer.com/validation - public validation evidence
• docs/MCP_QUICKSTART_DEMO.md - 5-minute demo walkthrough
• docs/MCP_EXAMPLE_TRANSCRIPTS.md - real-world MCP tool invocation examples
• docs/MCP_REAL_TRANSCRIPT.md - unedited transcript from FastAPI analysis
• scripts/mcp-demo.sh - automated demo script for multiple CLIs and repositories

License and Copyright

• License: Apache License 2.0 (LICENSE)
• Copyright holder: bigindexer.com
• Contributor terms: Developer Certificate of Origin (DCO) enforced on pull requests