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Encode Toolkit

by ammawla
Education & ResearchLow Risk10.0Local
Free

20 MCP tools + 47 skills for ENCODE Project genomics — search, download, pipelines

About

20 MCP tools + 47 skills for ENCODE Project genomics — search, download, pipelines

How to Install

Add this to your MCP configuration file:

{
  "mcpServers": {
    "io-github-ammawla-encode-toolkit": {
      "args": [
        "-y",
        "encode-toolkit"
      ],
      "command": "npx"
    }
  }
}

Security Report

10.0
Low Risk10.0Low Risk

Valid MCP server (2 strong, 1 medium validity signals). No known CVEs in dependencies. Package registry verified. Imported from the Official MCP Registry.

Scanned 4 files · 2 findings

Security scores are indicators to help you make informed decisions, not guarantees. Always review permissions before connecting any MCP server.

Permissions Required

This plugin requests these system permissions. Most are normal for its category.

file_system

Check that this permission is expected for this type of plugin.

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Tags

bioinformaticsencodeai-agentsclaudebioinformatics-toolmcp-serverclaude-codeclaude-mcpclaude-code-mcp m claude-code-pluginclaude-skillsclaude-code-skillsclaude-pluginai-bio

Use Cases

  • Bioinformatics
  • Research
  • Genomics
  • NGS

Links

Source CodeDocumentationnpm PackagePyPI Package

Details

Published March 9, 2026
Version v0.3.0-beta.8
0 installs
Local Plugin