Yes, ChatSpatial is free to use.

How do I install ChatSpatial?

ChatSpatial is a local plugin. Install it using PyPI package: chatspatial and add the generated configuration snippet to your AI app's MCP config file. Then restart your AI app.

What AI apps work with ChatSpatial?

ChatSpatial uses the Model Context Protocol (MCP) and works with any MCP-compatible AI app, including Claude, ChatGPT / Codex, Gemini, Copilot, Cursor, and more.

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ChatSpatial MCP Server

by Cafferychen777

CommunicationUse Caution4.2MCP RegistryLocal

Free

Server data from the Official MCP Registry

Natural language-driven spatial transcriptomics analysis with 60+ methods via MCP

About

Natural language-driven spatial transcriptomics analysis with 60+ methods via MCP

Security Report

4.2

Use Caution4.2High Risk

ChatSpatial is a well-structured bioinformatics MCP server for spatial transcriptomics analysis with proper dependency management and reasonable permission scoping for its domain. However, several code quality and security concerns warrant attention: unvalidated user-controlled file paths in analysis workflows, inconsistent error handling with broad exception catches, and unsafe subprocess/shell execution patterns in utility functions. The server appropriately uses environment variables for credentials and validates input parameters, but the code lacks comprehensive input sanitization for file operations and shows evidence of incomplete error handling in critical data processing paths. Supply chain analysis found 20 known vulnerabilities in dependencies (2 critical, 4 high severity). Package verification found 1 issue.

4 files analyzed · 29 issues found

Security scores are indicators to help you make informed decisions, not guarantees. Always review permissions before connecting any MCP server.

Permissions Required

This plugin requests these system permissions. Most are normal for its category.

File System Read

Reads files on your machine. Normal for tools that analyze or process local data.

File System Write

Writes or modifies files on your machine. Check that this is expected for the tool.

HTTP Network Access

Connects to external APIs or services over the internet.

env_vars

Check that this permission is expected for this type of plugin.

process_spawn

Check that this permission is expected for this type of plugin.

How to Install

Add this to your MCP configuration file:

{
  "mcpServers": {
    "io-github-cafferychen777-chatspatial": {
      "args": [
        "chatspatial"
      ],
      "command": "uvx"
    }
  }
}

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ChatSpatial MCP Server

About

Security Report

Findings (29)Action required

Permissions Required

How to Install

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No reviews yet

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