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MCP Server for 3D protein structural data retrieval & analysis from RCSB PDB, PDBe, and UniProt.
About
MCP Server for 3D protein structural data retrieval & analysis from RCSB PDB, PDBe, and UniProt.
What You'll Need
Set these up before or after installing:
Sets the minimum log level for output (e.g., 'debug', 'info', 'warn').
Environment variable: MCP_LOG_LEVEL
The hostname for the HTTP server.
Environment variable: MCP_HTTP_HOST
The port to run the HTTP server on.
Environment variable: MCP_HTTP_PORT
The endpoint path for the MCP server.
Environment variable: MCP_HTTP_ENDPOINT_PATH
Authentication mode to use: 'none', 'jwt', or 'oauth'.
Environment variable: MCP_AUTH_MODE
How to Install
Add this to your MCP configuration file:
{
"mcpServers": {
"io-github-cyanheads-protein-mcp-server": {
"env": {
"MCP_AUTH_MODE": "your-mcp-auth-mode-here",
"MCP_HTTP_HOST": "your-mcp-http-host-here",
"MCP_HTTP_PORT": "your-mcp-http-port-here",
"MCP_LOG_LEVEL": "your-mcp-log-level-here",
"MCP_HTTP_ENDPOINT_PATH": "your-mcp-http-endpoint-path-here"
},
"args": [
"-y",
"protein-mcp-server"
],
"command": "npx"
}
}
}Security Report
10.0
Low Risk10.0Low RiskValid MCP server (1 strong, 1 medium validity signals). 1 code issue detected. No known CVEs in dependencies. Package registry verified. Imported from the Official MCP Registry. Trust signals: trusted author (9/9 approved). 1 finding(s) downgraded by scanner intelligence.
3 files analyzed · 2 issues found
Security scores are indicators to help you make informed decisions, not guarantees. Always review permissions before connecting any MCP server.
Permissions Required
This plugin requests these system permissions. Most are normal for its category.
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