How do I install Galaxy?

Galaxy is a local plugin. Install it using PyPI package: galaxy-mcp and add the generated configuration snippet to your AI app's MCP config file. Then restart your AI app.

What credentials does Galaxy need?

Galaxy requires the following credentials or environment variables: GALAXY_URL, GALAXY_API_KEY. You can find setup instructions on the server detail page.

What AI apps work with Galaxy?

Galaxy uses the Model Context Protocol (MCP) and works with any MCP-compatible AI app, including Claude, ChatGPT / Codex, Gemini, Copilot, Cursor, and more.

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Galaxy MCP Server

by Galaxyproject

Developer ToolsLow Risk10.0MCP RegistryLocal

Free

Server data from the Official MCP Registry

MCP server for Galaxy bioinformatics platform - connect, execute tools, and manage workflows

About

MCP server for Galaxy bioinformatics platform - connect, execute tools, and manage workflows

What You'll Need

Set these up before or after installing:

URL of the Galaxy instance to connect to (e.g., https://usegalaxy.org)Optional

Environment variable: GALAXY_URL

API key for authenticating with the Galaxy instanceRequired

Environment variable: GALAXY_API_KEY

How to Install

Add this to your MCP configuration file:

{
  "mcpServers": {
    "io-github-galaxyproject-galaxy-mcp": {
      "env": {
        "GALAXY_URL": "your-galaxy-url-here",
        "GALAXY_API_KEY": "your-galaxy-api-key-here"
      },
      "args": [
        "galaxy-mcp"
      ],
      "command": "uvx"
    }
  }
}

Security Report

10.0

Low Risk10.0Low Risk

Valid MCP server (0 strong, 3 medium validity signals). No known CVEs in dependencies. Package registry verified. Imported from the Official MCP Registry.

3 files analyzed · 1 issue found

Security scores are indicators to help you make informed decisions, not guarantees. Always review permissions before connecting any MCP server.

Permissions Required

This plugin requests these system permissions. Most are normal for its category.

file_system

Check that this permission is expected for this type of plugin.

env_vars

Check that this permission is expected for this type of plugin.

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Local

Galaxy MCP Server

About

What You'll Need

How to Install

Security Report

Permissions Required

Findings (1)

Reviews

No reviews yet

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Galaxy MCP Server

About

What You'll Need

How to Install

Security Report

Permissions Required

Findings (1)

Reviews

No reviews yet

More Developer Tools MCP Servers

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mcp-creator-python

mcp-creator-typescript

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Document Converter