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1000+ scientific tools for AI scientists: life science, reserach, literature, and more.
About
1000+ scientific tools for AI scientists: life science, reserach, literature, and more.
What You'll Need
Set these up before or after installing:
OpenAI API key for LLM-based tool finding and embedding featuresRequired
Environment variable: OPENAI_API_KEY
Anthropic API key for Claude-based featuresRequired
Environment variable: ANTHROPIC_API_KEY
Google Gemini API key for Gemini-based featuresRequired
Environment variable: GEMINI_API_KEY
OpenRouter API key for accessing 100+ LLM modelsRequired
Environment variable: OPENROUTER_API_KEY
Azure OpenAI API key (alternative to OpenAI)Required
Environment variable: AZURE_OPENAI_API_KEY
HuggingFace token for accessing models and datasetsRequired
Environment variable: HF_TOKEN
NCBI/PubMed API key for higher rate limits (10 req/sec vs 3 req/sec). Register at https://www.ncbi.nlm.nih.gov/account/Required
Environment variable: NCBI_API_KEY
Semantic Scholar API key for higher rate limits (100 req/sec vs 1 req/sec). Register at https://www.semanticscholar.org/product/apiRequired
Environment variable: SEMANTIC_SCHOLAR_API_KEY
BioGRID API key for protein-protein interaction queries. Register free at https://webservice.thebiogrid.org/Required
Environment variable: BIOGRID_API_KEY
DisGeNET API key for gene-disease association data. Register free at https://www.disgenet.org/Required
Environment variable: DISGENET_API_KEY
OMIM API key for Mendelian disease data. Register at https://omim.org/apiRequired
Environment variable: OMIM_API_KEY
OncoKB API token for precision oncology annotations. Register at https://www.oncokb.org/apiAccessRequired
Environment variable: ONCOKB_API_TOKEN
NVIDIA NIM API key for AlphaFold2 structure prediction, molecular docking, and genomics tools. Get key at https://build.nvidia.comRequired
Environment variable: NVIDIA_API_KEY
USPTO API key for patent data access. Register at https://developer.uspto.gov/Required
Environment variable: USPTO_API_KEY
UMLS API key for medical terminology and concept mapping. Register at https://uts.nlm.nih.gov/uts/Required
Environment variable: UMLS_API_KEY
BRENDA enzyme database login email. Register at https://www.brenda-enzymes.org/
Environment variable: BRENDA_EMAIL
BRENDA enzyme database login passwordRequired
Environment variable: BRENDA_PASSWORD
How to Install
Add this to your MCP configuration file:
{
"mcpServers": {
"io-github-mims-harvard-tooluniverse": {
"env": {
"HF_TOKEN": "your-hf-token-here",
"BRENDA_EMAIL": "your-brenda-email-here",
"NCBI_API_KEY": "your-ncbi-api-key-here",
"OMIM_API_KEY": "your-omim-api-key-here",
"UMLS_API_KEY": "your-umls-api-key-here",
"USPTO_API_KEY": "your-uspto-api-key-here",
"GEMINI_API_KEY": "your-gemini-api-key-here",
"NVIDIA_API_KEY": "your-nvidia-api-key-here",
"OPENAI_API_KEY": "your-openai-api-key-here",
"BIOGRID_API_KEY": "your-biogrid-api-key-here",
"BRENDA_PASSWORD": "your-brenda-password-here",
"DISGENET_API_KEY": "your-disgenet-api-key-here",
"ONCOKB_API_TOKEN": "your-oncokb-api-token-here",
"ANTHROPIC_API_KEY": "your-anthropic-api-key-here",
"OPENROUTER_API_KEY": "your-openrouter-api-key-here",
"AZURE_OPENAI_API_KEY": "your-azure-openai-api-key-here",
"SEMANTIC_SCHOLAR_API_KEY": "your-semantic-scholar-api-key-here"
},
"args": [
"tooluniverse"
],
"command": "uvx"
}
}
}Security Report
10.0
Low Risk10.0Low RiskValid MCP server (1 strong, 1 medium validity signals). No known CVEs in dependencies. Package registry verified. Imported from the Official MCP Registry.
Scanned 4 files · 1 finding
Security scores are indicators to help you make informed decisions, not guarantees. Always review permissions before connecting any MCP server.
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