Server data from the Official MCP Registry
Drive VMD for GROMACS/LAMMPS analysis + clathrate-hydrate cage science (needs a local VMD)
About
Drive VMD for GROMACS/LAMMPS analysis + clathrate-hydrate cage science (needs a local VMD)
Security Report
This is a well-engineered MCP server for molecular dynamics visualization with generally sound security practices. It implements filesystem allowlisting, Tcl command whitelisting, and token-gated socket communication. A few minor code quality issues (broad exception handling, incomplete validation in one code path) and a potential socket resource leak under edge cases prevent a higher score, but the core security architecture is solid. Supply chain analysis found 5 known vulnerabilities in dependencies (2 critical, 3 high severity). Package verification found 1 issue.
6 files analyzed · 11 issues found
Security scores are indicators to help you make informed decisions, not guarantees. Always review permissions before connecting any MCP server.
Permissions Required
This plugin requests these system permissions. Most are normal for its category.
How to Install
Add this to your MCP configuration file:
{
"mcpServers": {
"io-github-wjgoarxiv-vmd-hydrate-mcp": {
"args": [
"-y",
"vmd-hydrate-mcp-demo"
],
"command": "npx"
}
}
}Reviews
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