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Drive VMD for GROMACS/LAMMPS analysis + clathrate-hydrate cage science (needs a local VMD)
Drive VMD for GROMACS/LAMMPS analysis + clathrate-hydrate cage science (needs a local VMD)
vmd-hydrate-mcp is a well-engineered MCP server for molecular dynamics analysis with thoughtful security design. Path allowlisting and Tcl command filtering prevent common attack vectors. The stateful VMD session uses token-gated loopback communication with proper timeout handling. No hardcoded secrets, malicious patterns, or dangerous credential handling detected. Minor code quality observations around broad exception handling and input validation do not materially impact the security posture. Supply chain analysis found 5 known vulnerabilities in dependencies (2 critical, 3 high severity). Package verification found 1 issue.
7 files analyzed · 11 issues found
Security scores are indicators to help you make informed decisions, not guarantees. Always review permissions before connecting any MCP server.
This plugin requests these system permissions. Most are normal for its category.
Add this to your MCP configuration file:
{
"mcpServers": {
"io-github-wjgoarxiv-vmd-hydrate-mcp": {
"args": [
"-y",
"vmd-hydrate-mcp-demo"
],
"command": "npx"
}
}
}Be the first to review this server!
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